Hello,
I'm also having problems with the absolute URLs that LinkAssisstant uses. In my case, I use a development site on a local server with a different URL from the one the live site has.
For example: mysite.localserver.com (Development) vs.
www.mysite.com (Live)
I need to upload the link directory into the dev site and be able to navigate through the different categories. I cannot do this now because all the navigation links point to the live site which does not have the pages.
If I could generate the directory with relative URLs, I would not have this problem. Any ideas?