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first I just need to know in what order should i use my powersuite?

You could go the following way:
- find good keywords using the keyword research function in Rank Tracker
- optimize your pages for these keywords (some 3-5 keywords per landing page)
- start your link building campaign using SEO SpyGlass and LinkAssistant
- regularly track your ranking positions with Rank Tracker throughout the whole SEO course.
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So please tell me why web auditor is pulling up these pages??

Would you mind sending us your project via Help -> Send project to support indicating this thread's URL in the comments field? We'll take a look.
Same concerns the errors issue - right now we do not even know the URL of your site, so we need to take a closer look.